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Sequence Manipulation Suite

DNA Pattern Find

DNA Pattern Find accepts one or more sequences along with a search pattern and returns the number and positions of sites that match the pattern. Use DNA Pattern Find to locate sequence regions that match a consensus sequence of interest.

Paste a raw sequence or one or more FASTA sequences into the text area below. White space and digits are removed before the pattern matching is performed. Input limit is 500000 characters.

Enter the search pattern to be used. The default pattern "ctt[ca]" searches for occurrences of "cttc" and "ctta".